Owkin

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Owkin works at the intersection of pathology and drug discovery — analyzing H&E histopathology slides from the TCGA database to quantify cell types, study how tumors interact with surrounding tissue spatially, and run survival analysis across patient cohorts. Connected to Neotask, a researcher can ask for these analyses directly instead of running each step manually in a separate pipeline.

• Analyzes H&E histopathology slides from the TCGA database
• Quantifies cell types and studies tumor microenvironments spatially
• Runs cohort-level survival analysis for drug discovery and clinical research

What you can automate

Owkin

Analyze H&E histopathology slides from the TCGA database to quantify cell types, study tumor microenvironments spatially, and run cohort-level survival analysis for drug discovery and clinical research.

Real workflows

Cohort-level tumor microenvironment study

Ask Owkin, through the agent, to quantify cell-type composition across a TCGA cohort and relate it to survival outcomes — the analysis runs against the slide and clinical data directly.

Frequently asked questions

What data source does this analyze?

H&E histopathology slides from the TCGA (The Cancer Genome Atlas) database specifically.

Can it connect cell-type findings to patient survival?

Yes — cohort-level survival analysis is one of its core capabilities, tying spatial findings to outcomes.